core functionality

DiscuitModel()

Create DiscuitModel

RunGelmanDiagnostic()

Run Gelman-Rubin convergence diagnostic

RunMetHastingsMcmc()

Run Metropolis-Hastings algrorithm

RunSimulation()

Run Gillespie simulation

visualisation

PlotGewekeSeries()

Plot Geweke diagnostic test results

PlotParameterHeatmap()

Plot heatmap of samples from an McMC analysis

PlotParameterMarginal()

Plot marginal distribution of samples from an McMC analysis

PlotParameterTrace()

Parameter trace plot

PlotTrajectory()

Plot single trajectory (i.e. event sequence)

utilities

TabulateGelmanResults()

Gelman-Rubin diagnostic convergence test summary table

TabulateMcmcProposals()

McMC proposal summary table

TabulateMcmcSamples()

McMC sample summary

LoadGelmanResults()

Load Gelman-Rubin convergence diagnostic results

LoadMcmcResults()

Load McMC results